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Posts tagged with: Identifying sequences

What do novel genomic sequences of diatoms BLAST to?

I blasted some 113K contigs to the Whole Genome Shotgun database from NCBI. These contigs originate from a diatom (heterokonts), way far phylogenetically from any metazoan. Bellow are the only hits that I got. Its funny and frustrating at the same time. Funny because I get all sorts of weird and interesting creatures in my results (star-nosed mole; armadillo; aye-aye lemur). Frustrating because these results don’t really help me beyond saying that my sequences are probably not bacteria.

>gb|AFFD01005562.1| Drosophila biarmipes ctg7180000294536, whole genome shotgun sequence == INSECT
>emb|CAKG01019517.1| Drosophila suzukii WGS project CAGK00000000 data, contig drspszk_2104792, == INSECT
>gb|AEQU011255777.1| Python molurus contig26097431, whole genome shotgun sequence == SNAKE
>gb|ACUP01002672.1| Glycine max chromosome 4 GLYMAchr_04_Cont2672, whole genome shotgun == SOY BEAN
>gb|AAFI02000003.1| Dictyostelium discoideum AX4 chromosome 1 DDB0232442.02, whole == SLIME MOLD
>gb|AEAQ01006275.1| Solenopsis invicta Si_gnG.contig09098, whole genome shotgun sequence == ANT
>gb|AKZM01041212.1| Ceratotherium simum simum contig041212, whole genome shotgun == WHITE RHINOCEROS
>gb|AGTM011602453.1| Daubentonia madagascariensis contig_1605346, whole genome shotgun == AYE-AYE LEMUR
>gb|AAPN01433181.1| Ornithorhynchus anatinus Cont293.145, whole genome shotgun sequence == PLATYPUS
>gb|AFNC01022486.1| Arabidopsis thaliana Contig_3958_18, whole genome shotgun sequence == FLOWER
>gb|AEFG01022091.1| Petromyzon marinus contig_22090, whole genome shotgun sequence == LAMPREY
>gb|AAGV03065875.1| Dasypus novemcinctus Contig65953, whole genome shotgun sequence == ARMADILLO
>gb|ABRT010150056.1| Tarsius syrichta cont1.150055, whole genome shotgun sequence == PHILIPPINE TARSIER
>gb|AHZZ01102666.1| Papio anubis, whole genome shotgun sequence == OLIVE BABOON
>gb|AANI01015498.1| Drosophila virilis strain TSC#15010-1051.87 Ctg01_15536, whole == INSECT
>emb|CABZ01111607.1| Danio rerio strain Tuebingen, whole genome shotgun sequencing, == ZEBRA FISH
>gb|AFSA01033859.1| Lactuca sativa, whole genome shotgun sequence == LETTUCE
>gb|AGCE01114062.1| Saimiri boliviensis boliviensis contig114062, whole genome shotgun == SQUIRREL MONKEY
>gb|AJVK01038101.1| Phlebotomus papatasi Contig6480.1, whole genome shotgun sequence == DIPTERAN
>gb|ADFV01027118.1| Nomascus leucogenys contig_72117, whole genome shotgun sequence == WHITE-CHEEKED GIBBON
>gb|AJFE01086779.1| Pan paniscus cntg87012, whole genome shotgun sequence == BONOBO
>gb|AABR06063353.1| Rattus norvegicus strain BN/SsNHsdMCW Contig63439, whole genome == RAT
>gb|AGDA01037861.1| Mengenilla moldrzyki contig16548, whole genome shotgun sequence == PARASITIC INSECT
>gb|AEQM02009745.1| Bombus impatiens ctg_1080001, whole genome shotgun sequence == BUMBLEBEE
>gb|AFNY01011920.1| Neolamprologus brichardi contig011920, whole genome shotgun sequence == TANGANYIKAN CICHLID
>gb|ABQD01000052.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 13 PHATRchr_13_Cont52, == DIATOM
>gb|AEAC01002359.1| Harpegnathos saltator strain R22 G/1 HarSal_1.0_1.contig2359, == JUMPING ANT
>gb|ABWE02003637.1| Hyaloperonospora arabidopsidis Emoy2 Contig474.0, whole genome == OOMYCETE
>gb|AFNH02001894.1| Gregarina niphandrodes contig01894, whole genome shotgun sequence == APICOMPLEXAN
>ref|NZ_AEWG01000018.1| Rubrivivax benzoatilyticus JA2 contig_18, whole genome shotgun == BETAPROTEOBACTERIUM
>gb|AAPU01010980.1| Drosophila mojavensis strain TSC#15081-1352.22 Ctg01_10981, whole == INSECT
>gb|AJFV01050767.1| Condylura cristata contig050767, whole genome shotgun sequence == STAR-NOSED MOLE
>emb|CAIC01021708.1| Musa acuminata subsp. malaccensis WGS project CAIC00000000 data, == BANANA
>gb|AGTM010534631.1| Daubentonia madagascariensis contig_535897, whole genome shotgun == AYE-AYE LEMUR
>gb|AASC02043444.1| Aplysia californica cont2.43443, whole genome shotgun sequence == SEA SLUG
>gb|AHZO01011761.1| Alatina moseri contig11761, whole genome shotgun sequence == BOX JELLYFISH
>gb|AEFK01032559.1| Sarcophilus harrisii Chr1_contig_000032558, whole genome shotgun == TASMANIAN DEVIL
>gb|AGXQ01000024.1| Bacteroides fragilis HMW 610 cont1.24, whole genome shotgun sequence == OBLIGATE GUT ANAEROB
>gb|AABR06098521.1| Rattus norvegicus strain BN/SsNHsdMCW Contig98680, whole genome == RAT
>dbj|BAAF04004842.1| Oryzias latipes DNA, contig4842 in scaffold5, strain: Hd-rR, == JAPANESE KILLFISH